PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc004849.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 255aa    MW: 28431.7 Da    PI: 8.6187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc004849.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.32.4e-081421993490
                     FAR1  34 vCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                              vC  + +++e +    + ++r+r+++r+gC+a++  +  ++g+++ + +e+ HnH+l+
  Itr_sc004849.1_g00001.1 142 VCMDSSSAAELDGVeCSVRKRRRVSNRVGCRAHVAFRYASNGTYCTHLFEERHNHSLS 199
                              56555555444433256678899*********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-5141199IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MHCGVFLNIV VCFLTLSGVF CNIEWSPKSS LPNLSSNYKY EFVDRVGVIV LVLHRHPNSS  60
LLISSANNRS EFVDRVGVPS WCLPISNSSS IAVGSYDRNG VSLTKYHVPV CEDSVKPIVG  120
KVFPDLDSAV EFYIKEGFKN VVCMDSSSAA ELDGVECSVR KRRRVSNRVG CRAHVAFRYA  180
SNGTYCTHLF EERHNHSLSS LLSRQFLKGN RKIGVGHMKF VADCVKANIE PVQSFRLFKE  240
MMGNFSNVCA TSVEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159163RKRRR
2160164KRRRV
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228